SNP Profiles matching CCN 51

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
1._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
2._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
3._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
4._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
5._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
6._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
7._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
8._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
9._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
10._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
11._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
12._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
13._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
14._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
15._GC-06-4-1-04	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
16._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	_	CT	AA
17._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	_	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
1._CCN_51	CT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
2._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
3._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
4._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
5._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
6._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
7._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
8._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
9._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
10._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
11._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
12._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
13._CCN_51	TT	AA	_	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
14._GC-07-019-1-21	TT	AA	_	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
15._GC-06-4-1-04	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
16._CCN_51	TT	AA	GG	CT	CC	_	GG	AG	CT	_	CC	TT	CT	AC
17._GC-07-019-1-21	TT	AA	GG	CT	CC	_	GG	AG	CT	_	CC	TT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
1._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
2._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
3._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
4._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
5._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
6._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
7._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
8._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
9._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
10._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
11._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
12._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
13._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
14._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
15._GC-06-4-1-04	AG	GG	AA	CT	AA	_	AA	CC	TT	AC	TT	GG	X_X	X_X
16._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
17._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X

Input profile: CCN_51

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USAPEN

Dapeng Zhang, 2016

1._CCN_51

identical
40 shared markers

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USASPC

Dapeng Zhang, 2016

2._CCN_51

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

3._CCN_51

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

4._CCN_51

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

5._CCN_51

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

6._CCN_51

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._CCN_51 GC-07-019-1-21

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

8._CCN_51 GC-07-019-1-21

98.8 %
40 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

9._CCN_51 GC-07-019-1-21

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

10._CCN_51 GC-07-019-1-21

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

11._CCN_51 GC-07-019-1-21

98.8 %
40 shared markers

Reference View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

12._CCN_51

98.8 %
40 shared markers

Verified View View all Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

13._CCN_51

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

14._CCN_51 GC-07-019-1-21

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

15._CCN_51 GC-06-4-1-04

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

16._CCN_51

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

17._CCN_51 GC-07-019-1-21

98.6 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25